PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G334600.1.p
Common NameLOC101769505, SETIT_004290mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family LBD
Protein Properties Length: 231aa    MW: 23567.9 Da    PI: 8.5034
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G334600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.63.7e-37431511100
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.........paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 
                         +C aCk+lrr+C+++Cv+ap+f         + + +++fa+vhk+FGasnv k+l+++p   r+da+ss++yeA+ar+ dPvyG+vg+il+
  Seita.5G334600.1.p  43 PCGACKFLRRRCVPGCVFAPHFgggsvrehgAGAGAAQFAAVHKVFGASNVAKMLSRVPVALRRDAASSVCYEAQARIADPVYGCVGTILA 133
                         7*********************99998877444557******************************************************* PP

              DUF260  83 lqqqleqlkaelallkee 100
                         lq+q++ ++ael+++++e
  Seita.5G334600.1.p 134 LQHQVALVQAELSMAQTE 151
                         *************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.1242152IPR004883Lateral organ boundaries, LOB
PfamPF031959.6E-4143149IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MSRAMQPPGK RAGAAPAAAA GPAHAQAQAQ AEEAPPGGAA GAPCGACKFL RRRCVPGCVF  60
APHFGGGSVR EHGAGAGAAQ FAAVHKVFGA SNVAKMLSRV PVALRRDAAS SVCYEAQARI  120
ADPVYGCVGT ILALQHQVAL VQAELSMAQT ELLNRRLALA TVNPAYSAAS PTSQMVNCGS  180
LSQAVDFIDI EPAMRGLPPP LVPSQQQPQR EDQDGGSPTI DVFSHNVLGK *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970122.11e-165PREDICTED: LOB domain-containing protein 4
SwissprotQ9SRV32e-50LBD20_ARATH; LOB domain-containing protein 20
TrEMBLK3XQV31e-164K3XQV3_SETIT; Uncharacterized protein
STRINGSi004290m1e-164(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140852526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.15e-42LOB domain-containing protein 20